Packages 
Package Description
fr.ens.biologie.genomique.aozan
Root package of Aozan.
fr.ens.biologie.genomique.aozan.aozan3  
fr.ens.biologie.genomique.aozan.aozan3.action  
fr.ens.biologie.genomique.aozan.aozan3.dataprocessor  
fr.ens.biologie.genomique.aozan.aozan3.dataprovider  
fr.ens.biologie.genomique.aozan.aozan3.datatypefilter  
fr.ens.biologie.genomique.aozan.aozan3.legacy  
fr.ens.biologie.genomique.aozan.aozan3.log  
fr.ens.biologie.genomique.aozan.aozan3.nanopore  
fr.ens.biologie.genomique.aozan.aozan3.recipe  
fr.ens.biologie.genomique.aozan.aozan3.runconfigurationprovider  
fr.ens.biologie.genomique.aozan.aozan3.samplesheetconverter  
fr.ens.biologie.genomique.aozan.aozan3.util  
fr.ens.biologie.genomique.aozan.collectors
This package defines the collectors which collects data for a run.
fr.ens.biologie.genomique.aozan.collectors.interop
This package defines the collectors which collects data from InterOp binary files for a run.
fr.ens.biologie.genomique.aozan.collectors.stats
This package defines the statistics collectors which collects data for a run.
fr.ens.biologie.genomique.aozan.demux
This package allows to re-demultiplexing selected project sequencing.
fr.ens.biologie.genomique.aozan.fastqc
This package contains a QCModule for FastQC that list the bad tiles in a fastq file and class used for modify fastqc bytecode, it is necessary with FastQC version 0.10.1.
fr.ens.biologie.genomique.aozan.fastqscreen
This package contains a module fastqscreen for the contamination detection in each sample of a run.
fr.ens.biologie.genomique.aozan.illumina
This package contains classes to handle files generated and used by Illumina software.
fr.ens.biologie.genomique.aozan.io
This package contains general I/O classes for Aozan.
fr.ens.biologie.genomique.aozan.tests
This package contains class of tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.tests.global
This package contains class of global tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.tests.lane
This package contains class of lane tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.tests.pooledsample
This package contains class of project tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.tests.project
This package contains class of project tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.tests.sample
This package contains class of sample tests which defines the collector to launch and creates a report of a quality control.
fr.ens.biologie.genomique.aozan.util
This package utility classes.