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java.lang.Objectfr.ens.transcriptome.nividic.platform.workflow.Algorithm
fr.ens.transcriptome.doelan.algorithms.QualityTest
fr.ens.transcriptome.doelan.algorithms.QualityGlobalTest
This class define a abstract global test. Tha aim of the a global test is only to set global parameters for the DoelanGenerateReport algorithm.
Field Summary |
Fields inherited from class fr.ens.transcriptome.doelan.algorithms.QualityTest |
CONFIGURE_TEST_EVENT, GLOBAL_TEST_INIT_EVENT, RESULT_EVENT |
Constructor Summary | |
QualityGlobalTest()
Public constructor. |
Method Summary | |
protected void |
doIt(fr.ens.transcriptome.nividic.platform.workflow.Container c,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters)
|
void |
doTest(fr.ens.transcriptome.nividic.platform.workflow.Container c,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters)
This method is called once all the unit tests was executed. |
boolean |
isAddable()
Test if the test could be diplayed in the list of tests to add. |
boolean |
isDeletable()
Test if the test is deletable(). |
boolean |
isModifiable()
Test if the test is modifiable. |
boolean |
isShowable()
Test if the test could be showed. |
boolean |
isUniqueInstance()
Test if only one instance of the test could be created. |
protected abstract QualityGlobalTestResult |
test(fr.ens.transcriptome.nividic.om.BioAssay bioassay,
fr.ens.transcriptome.nividic.om.BioAssay arrayList,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters,
QualityUnitTestResult[] unitResults)
Do the test. |
Methods inherited from class fr.ens.transcriptome.nividic.platform.workflow.Algorithm |
addListener, defineParameters, getId, getInstanceId, getLogger, getParameters, in, init, isPause, isStop, out, removeListener, sendEvent, terminate, workflowNewException, workflowStateChanged |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface fr.ens.transcriptome.nividic.platform.module.Module |
aboutModule |
Constructor Detail |
public QualityGlobalTest() throws fr.ens.transcriptome.nividic.platform.PlatformException
fr.ens.transcriptome.nividic.platform.PlatformException
- If the name or the version of the element is
null .Method Detail |
public boolean isDeletable()
isDeletable
in class QualityTest
public boolean isUniqueInstance()
isUniqueInstance
in class QualityTest
public boolean isModifiable()
isModifiable
in class QualityTest
public boolean isShowable()
isShowable
in class QualityTest
public boolean isAddable()
isAddable
in class QualityTest
protected void doIt(fr.ens.transcriptome.nividic.platform.workflow.Container c, fr.ens.transcriptome.nividic.util.parameter.Parameters parameters) throws fr.ens.transcriptome.nividic.platform.PlatformException
fr.ens.transcriptome.nividic.platform.PlatformException
public void doTest(fr.ens.transcriptome.nividic.platform.workflow.Container c, fr.ens.transcriptome.nividic.util.parameter.Parameters parameters) throws fr.ens.transcriptome.nividic.platform.PlatformException
c
- Containerparameters
- Parameters of the test
fr.ens.transcriptome.nividic.platform.PlatformException
- if an error occurs during the testprotected abstract QualityGlobalTestResult test(fr.ens.transcriptome.nividic.om.BioAssay bioassay, fr.ens.transcriptome.nividic.om.BioAssay arrayList, fr.ens.transcriptome.nividic.util.parameter.Parameters parameters, QualityUnitTestResult[] unitResults) throws fr.ens.transcriptome.nividic.platform.PlatformException
parameters
- Parameters of the testbioassay
- BioAssay to testarrayList
- The array listunitResults
- results of the units tests
fr.ens.transcriptome.nividic.platform.PlatformException
- if an error occurs while executing the test.
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