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java.lang.Objectfr.ens.transcriptome.nividic.platform.workflow.Algorithm
fr.ens.transcriptome.doelan.algorithms.QualityTest
fr.ens.transcriptome.doelan.algorithms.QualityUnitTest
This class define a quality unit test.
Field Summary |
Fields inherited from class fr.ens.transcriptome.doelan.algorithms.QualityTest |
CONFIGURE_TEST_EVENT, GLOBAL_TEST_INIT_EVENT, RESULT_EVENT |
Constructor Summary | |
QualityUnitTest()
Public constructor. |
Method Summary | |
protected void |
doIt(fr.ens.transcriptome.nividic.platform.workflow.Container c,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters)
|
boolean |
isAddable()
Test if the test could be diplayed in the list of tests to add. |
boolean |
isDeletable()
Test if the test is deletable(). |
boolean |
isModifiable()
Test if the test is modifiable. |
boolean |
isShowable()
Test if the test could be showed. |
boolean |
isUniqueInstance()
Test if only one instance of the test could be created. |
protected abstract QualityUnitTestResult |
test(fr.ens.transcriptome.nividic.om.BioAssay bioassay,
fr.ens.transcriptome.nividic.om.BioAssay arrayList,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters)
Test the quality of the bioassay. |
Methods inherited from class fr.ens.transcriptome.nividic.platform.workflow.Algorithm |
addListener, defineParameters, getId, getInstanceId, getLogger, getParameters, in, init, isPause, isStop, out, removeListener, sendEvent, terminate, workflowNewException, workflowStateChanged |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface fr.ens.transcriptome.nividic.platform.module.Module |
aboutModule |
Constructor Detail |
public QualityUnitTest() throws fr.ens.transcriptome.nividic.platform.PlatformException
fr.ens.transcriptome.nividic.platform.PlatformException
- If the name or the version of the element is
null .Method Detail |
protected void doIt(fr.ens.transcriptome.nividic.platform.workflow.Container c, fr.ens.transcriptome.nividic.util.parameter.Parameters parameters) throws fr.ens.transcriptome.nividic.platform.PlatformException
fr.ens.transcriptome.nividic.platform.PlatformException
public boolean isDeletable()
isDeletable
in class QualityTest
public boolean isUniqueInstance()
isUniqueInstance
in class QualityTest
public boolean isModifiable()
isModifiable
in class QualityTest
public boolean isShowable()
isShowable
in class QualityTest
public boolean isAddable()
isAddable
in class QualityTest
protected abstract QualityUnitTestResult test(fr.ens.transcriptome.nividic.om.BioAssay bioassay, fr.ens.transcriptome.nividic.om.BioAssay arrayList, fr.ens.transcriptome.nividic.util.parameter.Parameters parameters) throws fr.ens.transcriptome.nividic.platform.PlatformException
bioassay
- BioAssay to testparameters
- Parameters of the testarrayList
- The array list
fr.ens.transcriptome.nividic.platform.PlatformException
- if an error occurs while executing the test.
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