fr.ens.transcriptome.doelan.tests
Class GlobalMaxBadFeatureRemoved
java.lang.Object
fr.ens.transcriptome.nividic.platform.workflow.Algorithm
fr.ens.transcriptome.doelan.algorithms.QualityTest
fr.ens.transcriptome.doelan.algorithms.QualityGlobalTest
fr.ens.transcriptome.doelan.tests.GlobalMaxBadFeatureRemoved
- All Implemented Interfaces:
- fr.ens.transcriptome.nividic.platform.module.Module, fr.ens.transcriptome.nividic.platform.workflow.WorkflowListener
- public class GlobalMaxBadFeatureRemoved
- extends QualityGlobalTest
- implements fr.ens.transcriptome.nividic.platform.module.Module
This class define a Global test which count the number of bad removed spot.
- Author:
- Laurent Jourdren
Method Summary |
fr.ens.transcriptome.nividic.platform.module.AboutModule |
aboutModule()
Get the description of the module. |
protected fr.ens.transcriptome.nividic.util.parameter.Parameters |
defineParameters()
Set the parameters of the element. |
protected QualityGlobalTestResult |
test(fr.ens.transcriptome.nividic.om.BioAssay bioassay,
fr.ens.transcriptome.nividic.om.BioAssay arrayList,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters,
QualityUnitTestResult[] unitResults)
Do the test. |
Methods inherited from class fr.ens.transcriptome.nividic.platform.workflow.Algorithm |
addListener, getId, getInstanceId, getLogger, getParameters, in, init, isPause, isStop, out, removeListener, sendEvent, terminate, workflowNewException, workflowStateChanged |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GlobalMaxBadFeatureRemoved
public GlobalMaxBadFeatureRemoved()
throws fr.ens.transcriptome.nividic.platform.PlatformException
- Public constructor.
- Throws:
fr.ens.transcriptome.nividic.platform.PlatformException
- If the name or the version of the element is
null .
aboutModule
public fr.ens.transcriptome.nividic.platform.module.AboutModule aboutModule()
- Get the description of the module.
- Specified by:
aboutModule
in interface fr.ens.transcriptome.nividic.platform.module.Module
- Returns:
- The description of the module
defineParameters
protected fr.ens.transcriptome.nividic.util.parameter.Parameters defineParameters()
- Set the parameters of the element.
- Returns:
- The defaults parameters to set.
test
protected QualityGlobalTestResult test(fr.ens.transcriptome.nividic.om.BioAssay bioassay,
fr.ens.transcriptome.nividic.om.BioAssay arrayList,
fr.ens.transcriptome.nividic.util.parameter.Parameters parameters,
QualityUnitTestResult[] unitResults)
throws fr.ens.transcriptome.nividic.platform.PlatformException
- Do the test.
- Specified by:
test
in class QualityGlobalTest
- Parameters:
parameters
- Parameters of the testunitResults
- results of the units testsbioassay
- BioAssay to testarrayList
- The array list
- Throws:
fr.ens.transcriptome.nividic.platform.PlatformException
- if an error occurs while executing the test.
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