Collector (Aozan 3.1.1 API)

All Known Implementing Classes:

AbstractFastqCollector, AozanCollector, DemultiplexingCollector, DemultiplexStatsCollector, ErrorMetricsCollector, ExtractionMetricsCollector, FastQCCollector, FastqScreenCollector, GlobalStatsCollector, MultiQCCollector, PrimaryAnalysisMetricsCollector, ProjectStatisticsCollector, QualityMetricsCollector, ReadCollector, RunInfoCollector, SamplesheetCollector, SampleStatisticsCollector, StatisticsCollector, SubsetFastqCollector, TileMetricsCollector, UndeterminedIndexesCollector
```
public interface Collector
```
This interface define a Collector.

Since:

0.8

Author:

Laurent Jourdren

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`clear()`	Remove temporary files.
`void`	`collect(RunData data)`	Collect data.
`void`	`configure(QC qc, CollectorConfiguration conf)`	Configure the collector with the path of the run data.
`List<String>`	`getCollectorsNamesRequiered()`	Get the name of the collectors required to run this collector.
`String`	`getName()`	Get the name of the collector.
`boolean`	`isSummaryCollector()`	Test if the class is a summary collector.

- Method Detail
  - getName
```
String getName()
```
    Get the name of the collector.
    
    Returns:
    
    the name of the collector
  - getCollectorsNamesRequiered
```
List<String> getCollectorsNamesRequiered()
```
    Get the name of the collectors required to run this collector.
    
    Returns:
    
    a list of String with the name of the required collectors
  - configure
```
void configure(QC qc,
               CollectorConfiguration conf)
```
    Configure the collector with the path of the run data.
    
    Parameters:
    
    qc - QC object for the run
    
    conf - the collector configuration
  - collect
```
void collect(RunData data)
      throws AozanException
```
    Collect data.
    
    Parameters:
    
    data - result data object
    
    Throws:
    
    AozanException - if an error occurs while collecting data
  - clear
```
void clear()
```
    Remove temporary files.
  - isSummaryCollector
```
boolean isSummaryCollector()
```
    Test if the class is a summary collector. A summary collector must be executed after all the other collectors.
    
    Returns:
    
    true if the collector is a summary collector