Class PFPercentPooledSampleTest
- java.lang.Object
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- fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest
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- fr.ens.biologie.genomique.aozan.tests.pooledsample.PFPercentPooledSampleTest
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- All Implemented Interfaces:
AozanTest
,PooledSampleTest
public class PFPercentPooledSampleTest extends AbstractPooledSampleTest
The class define test to compute the percent reads passing filter on all samples replica in run.- Since:
- 2.0
- Author:
- Sandrine Perrin
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Constructor Summary
Constructors Constructor Description PFPercentPooledSampleTest()
Public constructor.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description List<AozanTest>
configure(TestConfiguration conf)
Configure the test.List<String>
getCollectorsNamesRequiered()
Get the name of the collectors required for the test.TestResult
test(RunData data, int pooledSampleId)
Do a test.-
Methods inherited from class fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest
getColumnName, getDescription, getName, getUnit, init
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Method Detail
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getCollectorsNamesRequiered
public List<String> getCollectorsNamesRequiered()
Description copied from interface:AozanTest
Get the name of the collectors required for the test.- Returns:
- a list of String with the name of the required collectors
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test
public TestResult test(RunData data, int pooledSampleId)
Description copied from interface:PooledSampleTest
Do a test.- Parameters:
data
- result objectpooledSampleId
- pooled sample Id- Returns:
- a TestResult object with the result of the test
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configure
public List<AozanTest> configure(TestConfiguration conf) throws AozanException
Description copied from interface:AozanTest
Configure the test.- Parameters:
conf
- the test configuration- Returns:
- list of Aozan tests
- Throws:
AozanException
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