Package fr.ens.biologie.genomique.aozan.tests.pooledsample

Class SampleCountPooledSampleTest

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest

fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractSimpleSampleTest

fr.ens.biologie.genomique.aozan.tests.pooledsample.SampleCountPooledSampleTest

All Implemented Interfaces:

AozanTest, PooledSampleTest

public class SampleCountPooledSampleTest
extends AbstractSimpleSampleTest

The Class SampleCountSampleTest.

Since:

2.4

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
SampleCountPooledSampleTest()	Public constructor.

Method Summary

Modifier and Type	Method	Description
List<String>	getCollectorsNamesRequiered()	Get the name of the collectors required for the test.
protected String	getKey(int pooledSampleId)	Get the the key in the RunData object for the value to test.
protected Class<?>	getValueType()	Get the type of the value.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractSimpleSampleTest

configure, getInterval, isValuePercent, test, testIndexedRead, transformValue

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest

getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SampleCountPooledSampleTest

public SampleCountPooledSampleTest()

Public constructor.

Method Details

getCollectorsNamesRequiered

public List<String> getCollectorsNamesRequiered()

Description copied from interface: AozanTest

Get the name of the collectors required for the test.

Returns:

a list of String with the name of the required collectors

getKey

protected String getKey(int pooledSampleId)

Description copied from class: AbstractSimpleSampleTest

Get the the key in the RunData object for the value to test.

Specified by:

getKey in class AbstractSimpleSampleTest

Parameters:

pooledSampleId - the pooled sample Id

Returns:

a String with the required key

getValueType

protected Class<?> getValueType()

Description copied from class: AbstractSimpleSampleTest

Get the type of the value.

Specified by:

getValueType in class AbstractSimpleSampleTest

Returns:

a Class object with the type