Package fr.ens.biologie.genomique.aozan.tests.sample

Class FastQCDuplicationLevelSampleTest

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest

fr.ens.biologie.genomique.aozan.tests.sample.AbstractFastQCSampleTest

fr.ens.biologie.genomique.aozan.tests.sample.FastQCDuplicationLevelSampleTest

All Implemented Interfaces:

AozanTest, SampleTest

public class FastQCDuplicationLevelSampleTest
extends AbstractFastQCSampleTest

This class define a sample test for FastQC duplication level module.

Since:

0.8

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
FastQCDuplicationLevelSampleTest()	Public constructor.

Method Summary

Modifier and Type	Method	Description
List<AozanTest>	configure(TestConfiguration conf)	Configure the test.
protected int	getHTMLAnchorIndex()	Get the anchor index of for the module in FastQC HTML report.
protected String	getQCModuleName()	Get the name of the FastQC module.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractFastQCSampleTest

getCollectorsNamesRequiered, test

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest

getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FastQCDuplicationLevelSampleTest

public FastQCDuplicationLevelSampleTest()

Public constructor.

Method Details

configure

public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException

Description copied from interface: AozanTest

Configure the test.

Parameters:

conf - the test configuration

Returns:

list of Aozan tests

Throws:

AozanException

getQCModuleName

protected String getQCModuleName()

Description copied from class: AbstractFastQCSampleTest

Get the name of the FastQC module.

Specified by:

getQCModuleName in class AbstractFastQCSampleTest

Returns:

the name of the FastQC module

getHTMLAnchorIndex

protected int getHTMLAnchorIndex()

Description copied from class: AbstractFastQCSampleTest

Get the anchor index of for the module in FastQC HTML report.

Specified by:

getHTMLAnchorIndex in class AbstractFastQCSampleTest

Returns:

the position anchor