| Type |
Changes |
By |
|---|
 |
The locale of the application is
now English/United
Kingdom. |
jourdren |
|
The creation of graphics is now in
a different thread to
avoid freezing the application. |
jourdren |
 |
The number of classes for
histograms can be set in
settings. |
jourdren |
|
Histograms are not updated while
computation. |
jourdren |
|
The calculation time is now showed
in the log for each
cell. |
jourdren |
|
The 3D view is only created once. |
jourdren |
|
GUI not showed whole file path to
avoid large windows
for GUI. |
jourdren |
|
Computation of a cell can be
relaunched in History tab. |
jourdren |
|
Add a tab that save the history of
the computation. |
jourdren |
 |
Add transparency to 3D view. |
jourdren |
|
Fix bug in apply to change
coordinates of points. |
jourdren |
Release 0.30 - 2008-01-16
| Type |
Changes |
By |
|---|
|
Fix Qt memory leak in
multi-threads. |
jourdren |
|
Fix compare of negative distances. |
jourdren |
|
Results tab is now functional. |
jourdren |
|
The particle type is now the
particle type select in the
settings. |
jourdren |
|
Add internal identifiers and
comments of particles in
data files. |
jourdren |
|
Rewriting of processor for huge
particles. |
jourdren |
|
Add graphics in Results tab. |
jourdren |
Release 0.29 - 2007-12-05
| Type |
Changes |
By |
|---|
|
Bug in basename of ".data" files
with batch mode. |
jourdren |
|
The basename of ".iv" et ".R" now
use the name of the
particle in Corsen settings. |
jourdren |
|
Calc area, volume and intensities
of cuboids. |
jourdren |
|
Add area, sphericity and density
to ".iv" files. |
jourdren |
|
32 bits images are not allowed in
Corsen Plugin. |
jourdren |
|
Add density in ".par" files. The
".par" file format is
now 1.3. Corsen can't read previous version of
the file
format. |
jourdren |
|
Show sphericity in summary in the
Corsen plugin. |
jourdren |
|
Fix freeze in multi-threads. |
jourdren |
|
Add "about" menu in ImageJ for
Corsen Plugin. |
jourdren |
Release 0.28 - 2007-11-26
| Type |
Changes |
By |
|---|
|
New ImageJ plugin wrote from
scratch. |
jourdren |
|
User can select the backend for
points data storage. |
jourdren |
|
Particles on edge can be removed
from the segmentation. |
jourdren |
|
Fix bug when scale values are not
equals to 1. |
jourdren |
Release 0.27 - 2007-11-21
| Type |
Changes |
By |
|---|
|
Correction de bogue dans la
reconstruction des objets
3D. |
jourdren |
|
Scales coefficients from settings
are now used. |
jourdren |
|
New ".par" file format
(uncompatible with the previous
version of the format). Add volume
and area. |
jourdren |
|
"Show Particles 3D" use only one
stack, and object are
in differents colors. |
jourdren |
|
Change the package of Particles3D.
Segmentation 3D is
now in a standalone class. |
jourdren |
|
Fix ".iv" file format. |
jourdren |
|
The ImageJ plugin is now called
"Corsen Plugin" in
ImageJ. |
jourdren |
|
New class for Particles3D
binarisation. |
jourdren |
Release 0.26 - 2007-11-12
| Type |
Changes |
By |
|---|
|
Fix, Get good pixel for
intensities. |
jourdren |
|
The code for saving particles 3D
in now outside the
plugin ImageJ. |
jourdren |
|
Plus d'exception, si l'image à
analyser dans le plugin
ImageJ n'a pas de fichier associé. |
jourdren |
Release 0.25 - 2007-11-09
| Type |
Changes |
By |
|---|
|
Use Qt Jambi 4.3.2_01 for GUI. |
jourdren |
|
Fix the search of the Corsen
version by the ImageJ
plugin. |
jourdren |
|
The ImageJ plugin is now package
as a jar archive. |
jourdren |
Release 0.24 - 2007-04-15
| Type |
Changes |
By |
|---|
|
Use maven 2 for building
executables and website. |
jourdren |
|
Use maven to build Java Web Start
version of Corsen. |
jourdren |
|
The version (and others
informations) of Corsen is now
stored in Corsen jar. This
informations are update when
building the executable. |
jourdren |
|
Fix a critical bug in Corsen (due
to changes in Corsen
0.23). |
jourdren |
Release 0.23 - 2007-01-04
| Type |
Changes |
By |
|---|
|
GUI use Qt Jambi 1.0. |
jourdren |
|
Use multithreading compatation of
distance. |
jourdren |
|
Various internal code
reorganisation and GUI. |
jourdren |
|
Update 3D visualization. |
jourdren |
|
Corsen can be use with command
line interface. |
jourdren |
Release 0.22 - 2006-12-14
| Type |
Changes |
By |
|---|
|
Works under Mac OS X. |
jourdren |
|
User can select for each particle
the type of distance
calculator. |
jourdren |
|
Now use Java 5. |
jourdren |
|
Add unit tests for calc distances
between particles. |
jourdren |
Release 0.21 - 2006-10-22
| Type |
Changes |
By |
|---|
|
New interface created with Qt
Jambi. Corsen can use
several differents GUI. |
jourdren |
|
Add a class to handle settings. |
jourdren |
|
Update the precision of internal
storage of points. |
jourdren |
Release 0.20 - 2006-10-25
| Type |
Changes |
By |
|---|
|
Show resultats in tables. |
jourdren |
|
Visualisation 3D of particles. |
jourdren |
|
Calc also the volume and the
intensity of cuboids. |
jourdren |
|
Fix errors in ".data" files. |
jourdren |
Release 0.19 - 2006-10-25
| Type |
Changes |
By |
|---|
|
Use internal points of Particles2D
to test the
intersection of 2 Particles2D. This methods is far much
fine. |
jourdren |
|
New option in R
("corsen.unicolor") to show particles in
differents colors. |
jourdren |
Release 0.18 - 2006-10-24
| Type |
Changes |
By |
|---|
|
To remove a cuboid, all neighbours
must be full. |
jourdren |
|
New faster algorithm for creation
of cuboids. |
jourdren |
Release 0.17 - 2006-09-15
| Type |
Changes |
By |
|---|
|
Update documentation of "calc.R". |
jourdren |
|
Informations about the progres of
Corsen is now correct. |
jourdren |
|
Fix the bug when reading ".par"
files. |
jourdren |
|
Autochoose the size of the
cuboids. |
jourdren |
|
Set the background of the 3D
visualization in black. Add
fog. |
jourdren |
Release 0.16 - 2006-09-13
| Type |
Changes |
By |
|---|
|
Optimize computation. |
jourdren |
|
Change the format of ".par" files.
Older files still
usable. |
jourdren |
|
Add a header and a column of
maximal distances in the
result file. |
jourdren |
|
Add a scale in RGL visualization. |
jourdren |
|
Move all the generation of RGL in
one class. |
jourdren |
|
Update distance calculation. |
jourdren |
|
Add new results files : ".iv"
files that contains
intensities and volumes of mito, RNA and cuboids. |
jourdren |
Release 0.15 - 2006-06-20
| Type |
Changes |
By |
|---|
|
Add middle points in 3D
visualization. |
jourdren |
Release 0.14 - 2006-06-16
| Type |
Changes |
By |
|---|
|
New method to test if a barycenter
of a RNA is in a mito
when distances
<
1. |
jourdren |
|
Fix nClass bug in "calc.R". |
jourdren |
|
The size of the points in 3D visualization can be
modified. |
jourdren |
Release 0.13 - 2006-06-15
| Type |
Changes |
By |
|---|
|
Autoloading of RGL when execute R script for show
particles in 3D. |
jourdren |
|
Add a variable in R script to disable surfaces and
barycenter in 3D visualization. |
jourdren |
|
Optimize the speed of the search of duplicated points
when reading ".par" files. |
jourdren |
|
Option for replace points by spheres. |
jourdren |
|
The number of classes can be set in parameter in
"calc.R". |
jourdren |
|
Included RNA in mito have negative distances. |
jourdren |
Release 0.12 - 2006-06-14
| Type |
Changes |
By |
|---|
|
Fix a bug in 3D segmentation: intersection tests was
doing with bad particles 2D in the first segmentations. |
jourdren |
Release 0.11 - 2006-06-13
| Type |
Changes |
By |
|---|
|
Fix bug in computation of distances between RNA and
mito. |
jourdren |
|
Remove duplicated points in Particles3D. |
jourdren |
|
Add a setting to fix the size of a pixel. |
jourdren |
Release 0.10 - 2006-06-13
| Type |
Changes |
By |
|---|
|
Fix the bog that removing Particles3D when adding to
itself. |
jourdren |
|
Show in 2D, segmented Particles 3D. |
jourdren |
|
Windows Look and Feel under Windows (don't work). |
jourdren |
Release 0.9 - 2006-05-18
| Type |
Changes |
By |
|---|
|
Add thresholds in ".par" files. |
jourdren |
|
Optimize computation of cuboids. Now very very fast. |
jourdren |
Release 0.8 - 2006-05-12
| Type |
Changes |
By |
|---|
|
Fix open file bug. |
jourdren |
|
Optimize computation of cuboids. |
jourdren |
|
Reorder the task : R graph are created after reading of
".par" files and computation of cuboids. |
jourdren |
|
Add new methods in Particles3D to write R code
immediately in a file to save memory. |
jourdren |
|
Show an error message when the directory or the files to
handle doesn't exists. |
jourdren |
|
Add a progress bar to show the progress of the
computation. |
jourdren |
|
Refresh the GUI while computation. |
jourdren |
Release 0.7 - 2006-05-11
| Type |
Changes |
By |
|---|
|
New name for Distance : Corsen |
jourdren |
|
The extension of output file of the plugin is ".par". |
jourdren |
|
The ".par" file contains information about the name and
the last modified date of the original image. |
jourdren |
|
Add the name and the version of application in the
".par" file. |
jourdren |
|
Remove debug printings. |
jourdren |
Release 0.6 - 2006-05-05
| Type |
Changes |
By |
|---|
|
Particles with null intensity are not saved. |
jourdren |
|
The size of the cuboids can now be defined in the
settings. |
jourdren |
|
The Z scale can be changed. |
jourdren |
|
The extension of the image file is not contain in the
output file of the plugin. |
jourdren |
|
Add another graph in R. |
jourdren |
|
Graph and summaries are now optional. Les graphiques et
les résumés sont optionnels. |
jourdren |
|
R script is now commented. |
jourdren |
Release 0.5 - 2006-05-04
| Type |
Changes |
By |
|---|
|
Add a R script to analyse the outputs of Distances
applications. |
jourdren |
|
Only one R file to generate each type of particles. |
jourdren |
|
Use ".data" extension for data to analyse with R. |
jourdren |
|
Use ".result" for the complete result file. |
jourdren |
|
In Distance application, a directory can be selected to
run the application in batch mode. |
jourdren |
|
In ImageJ plugin the dialogbox in now optional. |
jourdren |
Release 0.4 -
| Type |
Changes |
By |
|---|
|
Particles3D object contains all objects points with
intensities. |
jourdren |
|
Opimize memory for storing points. |
jourdren |
|
Automaticaly generation of outputs filenames (with
parameters in settings of the algorithm). |
jourdren |
|
Add computation of barycenters. |
jourdren |
|
Add computation of cuboids barycenters. |
jourdren |
|
Add computation of distances betweens RNA cuboids. |
jourdren |
|
Generate R source code to visualize 3D objects with RGl. |
jourdren |
Release 0.3 -
| Type |
Changes |
By |
|---|
|
Inclusion test of RNA in mitochondia. |
jourdren |
|
Add minimal distance for each RNA. |
jourdren |
|
Save current directory in distance application. |
jourdren |
|
Calc intensity sum for each object. |
jourdren |
|
Use the ImageJ alogorithm to calc areas. |
jourdren |
Release 0.2 -
| Type |
Changes |
By |
|---|
|
Add a GUI for distance computation. |
jourdren |
|
Use ImageJ global parameters to calc distances (e.g.
1px=0.1mm). |
jourdren |
Release 0.1 -
| Type |
Changes |
By |
|---|
|
Initial import. |
jourdren |
