About Eoulsan

• What is Eoulsan ?
• License
• People behind Eoulsan
• How to cite Eoulsan

Getting Eoulsan

• Downloading
• Installing
• Release Notes

Documentation

• Quickstart Guide
• Design file v1
• Design file v2
• Workflow file
• Configuration file
• Built-in modules
• Command line
• Cluster configuration
• Hadoop configuration
• Data repositories configuration
• Known bugs
• Mailing list

Development

• How to contribute
• Writing a Module plugin
• Downloading sources
• Compiling
• Developer Wiki
• Eoulsan on GitHub
• Javadoc

How to cite Eoulsan

Eoulsan 2: an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses

Nathalie Lehmann, Sandrine Perrin, Claire Wallon, Xavier Bauquet, Vivien Deshaies, Cyril Firmo, Runxin Du, Charlotte Berthelier, Céline Hernandez, Cédric Michaud, Denis Thieffry, Stéphane Le Crom, Morgane Thomas-Chollier and Laurent Jourdren
BioRxiv (2021): doi: 10.1101/2021.10.13.464219
[Abstract] [Full Text] [Full Text PDF]

Eoulsan: A Cloud Computing-Based Framework Facilitating High Throughput Sequencing Analyses.

Laurent Jourdren, Maria Bernard, Marie-Agnès Dillies and Stéphane Le Crom
Bioinformatics (2012) 28 (11): 1542-1543. doi: 10.1093/bioinformatics/bts165
[Abstract] [Full Text] [Full Text PDF] [Supplementary Data]