Package fr.ens.biologie.genomique.eoulsan.bio.io.hadoop
This package contains I/O classes for reading objects of the
fr.ens.biologie.genomique.eoulsan.bio.alignmentsfilters
package
from Hadoop.- Since:
- 1.0
-
Class Summary Class Description CompressedSplitFastqLineReader Counters This class define the counters names used in this package.ExpressionOutputFormat This class define a expression output format.ExpressionRecordWriter This class define a RecordWriter for expression files.FastqInputFormat This class define an InputFormat for FASTQ files for the Hadoop MapReduce framework.FastqLineRecordReader Treats keys as offset in file and value as line.FastqOutputFormat This class define a FASTQ output format.FastqRecordReader This class define a RecordReader for FASTQ files for the Hadoop MapReduce framework.FastqRecordWriter This class define a RecordWriter for FASTQ files.SAMInputFormat This class define an InputFormat for SAM files for the Hadoop MapReduce framework.SAMOutputFormat This class define a SAM output format.SAMRecordReader This class define a RecordReader for SAM files for the Hadoop MapReduce framework.SAMRecordWriter This class define a RecordWriter for SAM files.