Package fr.ens.biologie.genomique.eoulsan.core

This package contains Eoulsan workflow core class.

Since:

1.0

Interface Summary

Interface	Description
InputPort	This interface define an input port of a step.
InputPorts	This interface define a group of input ports.
Module	This interface define a Module.
OutputPort	This interface define an output port of a step.
OutputPorts	This interface define a group of output ports.
Port	This interface define a port of a step.
Ports<E extends Port>	This interface define a group of ports.
Progress	This interface allow to set the progress of a task.
Step	This interface define a step of the workflow.
StepConfigurationContext
TaskContext	This interface define the context of a step.
TaskResult	This class define the result of a step.
TaskStatus	This interface define a step status.
Workflow	This interface define a Workflow.

Class Summary

Class	Description
AbstractPort	Abstract class that define a port.
AbstractPorts<E extends Port>	This class define a basic implementation of a Ports class.
ContextUtils	This class define utility methods on Context.
DataUtils	This class define an utility on data object.
FileNaming	This class contains methods to create workflow data file names.
InputPortsBuilder	This class allow to easily create input ports for a step.
Modules	This class contains useful methods for writing Step classes.
Naming	This class contains methods to validate workflow object names.
OutputPortsBuilder	This class allow to easily create input ports for a step.
Parameter	This class define a parameter.
SimpleInputPort	This class define an input port of a step.
SimpleInputPorts	This class define a class that handles a set of input ports.
SimpleOutputPort	This class define an output port of a step.
SimpleOutputPorts	This class define a class that contains several output ports.

Enum Summary

Enum	Description
ParallelizationMode	This enum define the parallelization modes of a step.
Step.DiscardOutput	This enum define the value of the discard output attribute of the step tag in the Eoulsan workflow file.
Step.StepState	This enum define the states of the steps.
Step.StepType	This enum define the type of step.

Exception Summary

Exception	Description
FileNamingParsingRuntimeException	This class define a runtime exception for filename parsing errors.