Package fr.ens.biologie.genomique.eoulsan.design

Class ExperimentImpl

java.lang.Object

fr.ens.biologie.genomique.eoulsan.design.ExperimentImpl

All Implemented Interfaces:

Experiment, Serializable

public class ExperimentImpl
extends Object
implements Serializable, Experiment

This class defines the default implementation of an experiment.

Since:

2.0

Author:

Xavier Bauquet

See Also:

Serialized Form

Method Summary

Modifier and Type	Method	Description
ExperimentSample	addSample(Sample sample)	Add a sample.
boolean	containsSample(Sample sample)	Test if the experiment contains a sample.
boolean	equals(Object o)
Design	getDesign()	Get the design related to the experiment.
ExperimentSample	getExperimentSample(Sample sample)	Get the experiment sample related to the sample.
List<ExperimentSample>	getExperimentSamples()	Get experiment samples list.
String	getId()	get the experiment id.
fr.ens.biologie.genomique.eoulsan.design.ExperimentMetadataImpl	getMetadata()	Get the experiment metadata.
String	getName()	Get the experiment name.
int	getNumber()	Get the experiment number.
List<Sample>	getSamples()	Get the samples of the experiment.
int	hashCode()
void	removeSample(Sample sample)	Remove the sample.
void	setName(String newExperimentName)	Set the name of the experiment.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Method Detail

getDesign

public Design getDesign()

Description copied from interface: Experiment

Get the design related to the experiment.

Specified by:

getDesign in interface Experiment

Returns:

the Design object related to the experiment

getId

public String getId()

Description copied from interface: Experiment

get the experiment id.

Specified by:

getId in interface Experiment

Returns:

the experiment id

getName

public String getName()

Description copied from interface: Experiment

Get the experiment name.

Specified by:

getName in interface Experiment

Returns:

the experiment name

getNumber

public int getNumber()

Description copied from interface: Experiment

Get the experiment number.

Specified by:

getNumber in interface Experiment

Returns:

the experiment number

getMetadata

public fr.ens.biologie.genomique.eoulsan.design.ExperimentMetadataImpl getMetadata()

Description copied from interface: Experiment

Get the experiment metadata.

Specified by:

getMetadata in interface Experiment

Returns:

the experiment metadata

getSamples

public List<Sample> getSamples()

Description copied from interface: Experiment

Get the samples of the experiment.

Specified by:

getSamples in interface Experiment

Returns:

a list of ExperimentSample object

getExperimentSamples

public List<ExperimentSample> getExperimentSamples()

Description copied from interface: Experiment

Get experiment samples list.

Specified by:

getExperimentSamples in interface Experiment

Returns:

a list of ExperimentSample object

getExperimentSample

public ExperimentSample getExperimentSample(Sample sample)

Description copied from interface: Experiment

Get the experiment sample related to the sample.

Specified by:

getExperimentSample in interface Experiment

Parameters:

sample - the sample

Returns:

an experiment sample object if exists or null

setName

public void setName(String newExperimentName)

Description copied from interface: Experiment

Set the name of the experiment.

Specified by:

setName in interface Experiment

Parameters:

newExperimentName - the new experiment name

addSample

public ExperimentSample addSample(Sample sample)

Description copied from interface: Experiment

Add a sample.

Specified by:

addSample in interface Experiment

Parameters:

sample - the sample to add

Returns:

an experiment sample object

removeSample

public void removeSample(Sample sample)

Description copied from interface: Experiment

Remove the sample.

Specified by:

removeSample in interface Experiment

Parameters:

sample - the sample to remove

containsSample

public boolean containsSample(Sample sample)

Description copied from interface: Experiment

Test if the experiment contains a sample.

Specified by:

containsSample in interface Experiment

Parameters:

sample - the sample to test

Returns:

true if the sample is the experiment

toString

public String toString()

Overrides:

toString in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object