Package fr.ens.biologie.genomique.eoulsan.design

Interface SampleMetadata

All Superinterfaces:

Metadata

public interface SampleMetadata
extends Metadata

This interface defines the sample metadata.

Since:

2.0

Author:

Xavier Bauquet

Field Summary

Fields

Modifier and Type	Field	Description
static String	COMMENT_KEY
static String	CONDITION_KEY
static String	DATE_KEY
static String	DESCRIPTION_KEY
static String	FASTQ_FORMAT_KEY
static String	OPERATOR_KEY
static String	READS_KEY
static String	REFERENCE_KEY
static String	REP_TECH_GROUP_KEY
static String	SERIAL_NUMBER_KEY
static String	UUID_KEY

Method Summary

Modifier and Type	Method	Description
boolean	containsComment()	Test if the comment field exists.
boolean	containsCondition()	Test if the condition field exists.
boolean	containsDate()	Test if the date field exists.
boolean	containsDescription()	Test if the description field exists.
boolean	containsFastqFormat()	Test if the fastq format field exists.
boolean	containsOperator()	Test if the operator field exists.
boolean	containsReads()	Test if the reads field exists.
boolean	containsReference()	Test if the reference field exists.
boolean	containsRepTechGroup()	Test if the RepTechGroup field exists.
boolean	containsSerialNumber()	Test if the serial number field exists.
boolean	containsUUID()	Test if the UUID field exists.
String	getComment()	Get the comment.
String	getCondition()	Get the condition.
String	getDate()	Get the date.
String	getDescription()	Get the description.
fr.ens.biologie.genomique.kenetre.bio.FastqFormat	getFastqFormat()	Get the fastq format.
String	getOperator()	Get the operator.
List<String>	getReads()	Get the reads as a list.
String	getReference()	Get the reference.
String	getRepTechGroup()	Get the RepTechGroup.
String	getSerialNumber()	Get the serial number.
String	getUUID()	Get the UUID.
boolean	isReference()	Get the reference.
void	setComment(String newComment)	Set the comment.
void	setCondition(String newCondition)	Set the condition.
void	setDate(String newDate)	Set the date.
void	setDescription(String newDescription)	Set the description.
void	setFastqFormat(fr.ens.biologie.genomique.kenetre.bio.FastqFormat newfastqFormat)	Set the fastq format.
void	setOperator(String newOperator)	Set the operator.
void	setReads(List<String> newReads)	Set the reads.
void	setReference(String newReference)	Set the reference.
void	setRepTechGroup(String newReptechGroup)	Set the ReptechGroup.
void	setSerialNumber(String newSerialNumber)	Set the serial number.
void	setUUID(String newUUID)	Set the UUID.

Methods inherited from interface fr.ens.biologie.genomique.eoulsan.design.Metadata

contains, entrySet, equals, get, getAsBoolean, getAsList, getTrimmed, isEmpty, keySet, remove, set, set, size

Field Detail

READS_KEY

static final String READS_KEY

See Also:

Constant Field Values

DESCRIPTION_KEY

static final String DESCRIPTION_KEY

See Also:

Constant Field Values

OPERATOR_KEY

static final String OPERATOR_KEY

See Also:

Constant Field Values

COMMENT_KEY

static final String COMMENT_KEY

See Also:

Constant Field Values

DATE_KEY

static final String DATE_KEY

See Also:

Constant Field Values

SERIAL_NUMBER_KEY

static final String SERIAL_NUMBER_KEY

See Also:

Constant Field Values

UUID_KEY

static final String UUID_KEY

See Also:

Constant Field Values

REP_TECH_GROUP_KEY

static final String REP_TECH_GROUP_KEY

See Also:

Constant Field Values

REFERENCE_KEY

static final String REFERENCE_KEY

See Also:

Constant Field Values

FASTQ_FORMAT_KEY

static final String FASTQ_FORMAT_KEY

See Also:

Constant Field Values

CONDITION_KEY

static final String CONDITION_KEY

See Also:

Constant Field Values

Method Detail

getReads

List<String> getReads()

Get the reads as a list.

Returns:

the list of reads

getDescription

String getDescription()

Get the description.

Returns:

the description

getOperator

String getOperator()

Get the operator.

Returns:

the operator

getComment

String getComment()

Get the comment.

Returns:

the comment

getDate

String getDate()

Get the date.

Returns:

the date

getSerialNumber

String getSerialNumber()

Get the serial number.

Returns:

the serial number

getUUID

String getUUID()

Get the UUID.

Returns:

the UUID

getRepTechGroup

String getRepTechGroup()

Get the RepTechGroup.

Returns:

the RepTechGroup

getReference

String getReference()

Get the reference.

Returns:

the reference

isReference

boolean isReference()

Get the reference.

Returns:

the reference

getFastqFormat

fr.ens.biologie.genomique.kenetre.bio.FastqFormat getFastqFormat()

Get the fastq format.

Returns:

the fastq format

getCondition

String getCondition()

Get the condition.

Returns:

the condition

setReads

void setReads(List<String> newReads)

Set the reads.

Parameters:

newReads - the new reads

setDescription

void setDescription(String newDescription)

Set the description.

Parameters:

newDescription - the new description

setOperator

void setOperator(String newOperator)

Set the operator.

Parameters:

newOperator - the new operator

setComment

void setComment(String newComment)

Set the comment.

Parameters:

newComment - the new comment

setDate

void setDate(String newDate)

Set the date.

Parameters:

newDate - the new date

setSerialNumber

void setSerialNumber(String newSerialNumber)

Set the serial number.

Parameters:

newSerialNumber - the new serial number

setUUID

void setUUID(String newUUID)

Set the UUID.

Parameters:

newUUID - the new UUID

setRepTechGroup

void setRepTechGroup(String newReptechGroup)

Set the ReptechGroup.

Parameters:

newReptechGroup - the new ReptechGroup

setReference

void setReference(String newReference)

Set the reference.

Parameters:

newReference - the new reference

setFastqFormat

void setFastqFormat(fr.ens.biologie.genomique.kenetre.bio.FastqFormat newfastqFormat)

Set the fastq format.

Parameters:

newfastqFormat - the new fastq format

setCondition

void setCondition(String newCondition)

Set the condition.

Parameters:

newCondition - the new condition

containsReads

boolean containsReads()

Test if the reads field exists.

Returns:

true if the reads field exists

containsDescription

boolean containsDescription()

Test if the description field exists.

Returns:

true if the description field exists

containsOperator

boolean containsOperator()

Test if the operator field exists.

Returns:

true if the operator field exists

containsComment

boolean containsComment()

Test if the comment field exists.

Returns:

true if the comment field exists

containsDate

boolean containsDate()

Test if the date field exists.

Returns:

true if the date field exists

containsSerialNumber

boolean containsSerialNumber()

Test if the serial number field exists.

Returns:

true if the serial number field exists

containsUUID

boolean containsUUID()

Test if the UUID field exists.

Returns:

true if the UUID field exists

containsRepTechGroup

boolean containsRepTechGroup()

Test if the RepTechGroup field exists.

Returns:

true if the RepTechGroup field exists

containsReference

boolean containsReference()

Test if the reference field exists.

Returns:

true if the reference field exists

containsFastqFormat

boolean containsFastqFormat()

Test if the fastq format field exists.

Returns:

true if the fastq format field exists

containsCondition

boolean containsCondition()

Test if the condition field exists.

Returns:

true if the condition field exists