Package fr.ens.biologie.genomique.eoulsan.galaxytools

Class ToolExecutor

java.lang.Object

fr.ens.biologie.genomique.eoulsan.galaxytools.ToolExecutor

public class ToolExecutor
extends Object

The class define an executor on tool set in XML file.

Since:

2.0

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
ToolExecutor(TaskContext context, ToolInfo toolData, String commandLine, Set<File> inputFiles)	Constructor a new galaxy tool executor.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ToolExecutor

public ToolExecutor(TaskContext context,
                    ToolInfo toolData,
                    String commandLine,
                    Set<File> inputFiles)
             throws IOException

Constructor a new galaxy tool executor.

Parameters:

context - the context

toolData - the tool data

commandLine - the command line

inputFiles - input files to use

Throws:

IOException - if an error occurs while executing the command