Class MergeInputRepLocalModule

  • All Implemented Interfaces:
    Module

    public class MergeInputRepLocalModule
    extends AbstractModule
    This class merges SAM files of input of the same experiment. It uses Picard's MergeSamFiles to merge SAM files from inputs of the same experiment.
    Author:
    Celine Hernandez - CSB lab - ENS - Paris
    • Constructor Detail

      • MergeInputRepLocalModule

        public MergeInputRepLocalModule()
    • Method Detail

      • getName

        public String getName()
        Name of the Step.
        Returns:
        the name of the module
      • getVersion

        public fr.ens.biologie.genomique.kenetre.util.Version getVersion()
        Version.
        Returns:
        a Version object with the version of the Module
      • execute

        public TaskResult execute​(TaskContext context,
                                  TaskStatus status)
        Merge input replicates.
        Parameters:
        context - Execution context
        status - of the task