Package fr.ens.biologie.genomique.eoulsan.modules.diffana

Class Normalization

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.diffana.Normalization

Direct Known Subclasses:

DiffAna

public class Normalization
extends Object

This class create and launch an R script to compute normalisation of expression data

Since:

1.2

Author:

Vivien Deshaies

Constructor Summary

Constructors

Constructor	Description
Normalization(RExecutor executor, Design design)	Public constructor.

Method Summary

Modifier and Type	Method	Description
void	run(TaskContext context, Data data)	Run normalisation step.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Normalization

public Normalization(RExecutor executor,
 Design design)
              throws EoulsanException

Public constructor.

Parameters:

executor - executor to use to execute the normalization

design - The design object

Throws:

EoulsanException - if an error occurs if connection to RServe server cannot be established

Method Details

run

public void run(TaskContext context,
 Data data)
         throws EoulsanException

Run normalisation step.

Parameters:

context - task context

data - data to process

Throws:

EoulsanException - if the number of sample to analyze if lower than one