Package fr.ens.biologie.genomique.eoulsan.modules.mapping.local
This package contain all the classes related to the mapping (reads filtering,
mapping and alignments filtering) step in local mode.
- Since:
- 1.0
-
Class Summary Class Description BAM2SAMLocalModule This class define a module for converting BAM files into SAM.ReadsFilterLocalModule This class define a module for reads filtering.ReadsMapperLocalModule This class define a module for reads mapping.SAM2BAMLocalModule This class define a module for converting SAM files into BAM.SAM2FASTQLocalModule This class define a module for converting SAM files into FASTQ.SAMFilterLocalModule This class define a Step for alignments filtering.Splice2BEDModule This class define a module for converting SAM files into BED.