MapperInputPreprocessor (Eoulsan 2.6.1 API)

java.lang.Object
- fr.ens.biologie.genomique.eoulsan.modules.multiqc.MapperInputPreprocessor

All Implemented Interfaces:

InputPreprocessor
```
public class MapperInputPreprocessor
extends Object
implements InputPreprocessor
```
This class define a preprocessor for mapper reports.

Since:

2.2

Author:

Laurent Jourdren

Field Summary

Fields
Modifier and Type Field Description

static String REPORT_NAME

Constructor Summary

Constructors
Constructor Description

MapperInputPreprocessor()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`DataFormat`	`getDataFormat()`	Get the DataFormat handled by the preprocessor.
`String`	`getReportName()`	Get the name of the report.
`void`	`preprocess(TaskContext context, Data data, File multiQCInputDirectory)`	Preprocess data.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - REPORT_NAME
```
public static final String REPORT_NAME
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - MapperInputPreprocessor
```
public MapperInputPreprocessor()
```
- Method Detail
  - getReportName
```
public String getReportName()
```
    Description copied from interface: InputPreprocessor
    
    Get the name of the report.
    
    Specified by:
    
    getReportName in interface InputPreprocessor
    
    Returns:
    
    the name of the report
  - getDataFormat
```
public DataFormat getDataFormat()
```
    Description copied from interface: InputPreprocessor
    
    Get the DataFormat handled by the preprocessor.
    
    Specified by:
    
    getDataFormat in interface InputPreprocessor
    
    Returns:
    
    the DataFormat handled by the preprocessor
  - preprocess
```
public void preprocess(TaskContext context,
                       Data data,
                       File multiQCInputDirectory)
                throws IOException
```
    Description copied from interface: InputPreprocessor
    
    Preprocess data.
    
    Specified by:
    
    preprocess in interface InputPreprocessor
    
    Parameters:
    
    context - Step context
    
    data - data to preprocess
    
    multiQCInputDirectory - MultiQC input directory
    
    Throws:
    
    IOException - if an error occurs while preprocessing the data