Package fr.ens.biologie.genomique.eoulsan.util.r

Class RExecutorFactory

java.lang.Object

fr.ens.biologie.genomique.eoulsan.util.r.RExecutorFactory

public class RExecutorFactory
extends Object

This class define a factory to create RExecutor objects.

Since:

2.0

Author:

Laurent Jourdren

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	RExecutorFactory.Mode	Define a enum for the mode of RExecutor.

Constructor Summary

Constructors

Constructor	Description
RExecutorFactory()

Method Summary

Modifier and Type	Method	Description
static RExecutor	newRExecutor(RExecutorFactory.Mode mode, String rServeServer, String dockerImage, File outputDirectory, File temporaryDirectory)	Create a new instance of RExecutor.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RExecutorFactory

public RExecutorFactory()

Method Detail

newRExecutor

public static RExecutor newRExecutor(RExecutorFactory.Mode mode,
                                     String rServeServer,
                                     String dockerImage,
                                     File outputDirectory,
                                     File temporaryDirectory)
                              throws IOException

Create a new instance of RExecutor.

Parameters:

mode - executor mode

rServeServer - the Rserve server

dockerImage - docker image

outputDirectory - output directory

temporaryDirectory - temporary directory

Returns:

a new instance of RExecutor

Throws:

IOException - if an error occurs while creating the instance of RExecutor