Doelan is bundled with many tests. However, you can add your own test to Doelan thanks to the Doelan plugin system. The writing a plugin page learns you how to do this.
The Doelan builtins tests can play with various features of the chips such spots diameter, spots flags, spots heterogeneity, saturated pixels of the spots...
Here is the list of the built-in tests, click on a test to display documentation on parameters:
Unit tests
| Test name | Description |
|---|---|
| DoelanConfigure | Configure global parameters for the TestSuite |
| BadFeature | Test for bad feature flag (Genepic flag=-100) |
| AbsentFeature | Test for absent feature flag (Genepix flag=-75) |
| NotFoundFeature | Test for not found feature flag (Genepix flag=-50) |
| HeterogeneousFeature | Test for heterogeneous spots |
| SaturatedPixels | Test for saturated spots |
| MinimalIntensity | Test for minimal spot intensity |
| MaxDiameterFeature | Test maximal diameter of spots |
| MinDiameterFeature | Test minimal diameter of spots |
| GenericTest | Generic test to test any column of a GPR file |
Global tests
| Test name | Description |
|---|---|
| GlobalMaxBadFeatures | Global test to count rejected spots |
| GlobalMaxBadFeaturesRemoved | Global test to count removed spots from output file |
Special
| Test name | Description |
|---|---|
| DoelanConfigure | Configure global parameters for the TestSuite |
