Uses of Interface
fr.ens.biologie.genomique.eoulsan.checkers.Checker
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Packages that use Checker Package Description fr.ens.biologie.genomique.eoulsan.checkers This package contains and define checkers of DataFormat.fr.ens.biologie.genomique.eoulsan.core This package contains Eoulsan workflow core class.fr.ens.biologie.genomique.eoulsan.core.workflow This package contains Eoulsan workflow dedicated classes.fr.ens.biologie.genomique.eoulsan.data This package contains classes for data files, data types and data formats.fr.ens.biologie.genomique.eoulsan.modules This package define the steps for the Eoulsan workflow.fr.ens.biologie.genomique.eoulsan.modules.diffana This package contain all the classes related to the differential analysis step. -
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Uses of Checker in fr.ens.biologie.genomique.eoulsan.checkers
Classes in fr.ens.biologie.genomique.eoulsan.checkers that implement Checker Modifier and Type Class Description class
DESeq2DesignChecker
This class define a Checker on the design for DESeq2 analyzes.class
GenomeChecker
This class define a Checker on genome FASTA files.class
GFFChecker
This class define a Checker on GFF annotation.class
GTFChecker
This class define a Checker on GTF annotation.class
ReadsChecker
This class define a checker on FASTQ files. -
Uses of Checker in fr.ens.biologie.genomique.eoulsan.core
Methods in fr.ens.biologie.genomique.eoulsan.core that return Checker Modifier and Type Method Description Checker
Module. getChecker()
Get the checker for the moduleChecker
Step. getChecker()
Get Checker. -
Uses of Checker in fr.ens.biologie.genomique.eoulsan.core.workflow
Methods in fr.ens.biologie.genomique.eoulsan.core.workflow that return Checker Modifier and Type Method Description Checker
AbstractStep. getChecker()
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Uses of Checker in fr.ens.biologie.genomique.eoulsan.data
Methods in fr.ens.biologie.genomique.eoulsan.data that return Checker Modifier and Type Method Description Checker
DataFormat. getChecker()
Get the checker needed to check data of this type.Checker
MapperIndexDataFormat. getChecker()
Checker
XMLDataFormat. getChecker()
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Uses of Checker in fr.ens.biologie.genomique.eoulsan.modules
Methods in fr.ens.biologie.genomique.eoulsan.modules that return Checker Modifier and Type Method Description Checker
AbstractModule. getChecker()
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Uses of Checker in fr.ens.biologie.genomique.eoulsan.modules.diffana
Methods in fr.ens.biologie.genomique.eoulsan.modules.diffana that return Checker Modifier and Type Method Description Checker
DESeq2Module. getChecker()
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