Package fr.ens.biologie.genomique.eoulsan.data.storages

Class DataFileDataPath

java.lang.Object

fr.ens.biologie.genomique.eoulsan.data.storages.DataFileDataPath

All Implemented Interfaces:

fr.ens.biologie.genomique.kenetre.storage.DataPath, Comparable<DataFileDataPath>

public class DataFileDataPath
extends Object
implements fr.ens.biologie.genomique.kenetre.storage.DataPath, Comparable<DataFileDataPath>

This class define a bridge between Kenetre DataPath objects and Eoulsan DataFile objects.

Since:

2.6

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
DataFileDataPath(DataFile file)	Constructor.
DataFileDataPath(fr.ens.biologie.genomique.kenetre.storage.DataPath parent, String filename)	Constructor.
DataFileDataPath(String source)	Constructor.

Method Summary

Modifier and Type	Method	Description
fr.ens.biologie.genomique.kenetre.storage.DataPath	canonicalize()
int	compareTo(DataFileDataPath o)
void	copy(fr.ens.biologie.genomique.kenetre.storage.DataPath output)
OutputStream	create()
boolean	equals(Object obj)
boolean	exists()
long	getContentLength()
DataFile	getDataFile()
long	getLastModified()
String	getName()
String	getSource()
int	hashCode()
List<fr.ens.biologie.genomique.kenetre.storage.DataPath>	list()
InputStream	open()
OutputStream	rawCreate()
InputStream	rawOpen()
void	symlinkOrCopy(fr.ens.biologie.genomique.kenetre.storage.DataPath link)
File	toFile()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

DataFileDataPath

public DataFileDataPath(String source)

Constructor.

Parameters:

source - source of the DataFile

DataFileDataPath

public DataFileDataPath(DataFile file)

Constructor.

Parameters:

file - DataFile object to wrap

DataFileDataPath

public DataFileDataPath(fr.ens.biologie.genomique.kenetre.storage.DataPath parent,
                        String filename)

Constructor.

Parameters:

parent - parent DataFile

filename - filename

Method Detail

getDataFile

public DataFile getDataFile()

canonicalize

public fr.ens.biologie.genomique.kenetre.storage.DataPath canonicalize()
                                                                throws IOException

Specified by:

canonicalize in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

create

public OutputStream create()
                    throws IOException

Specified by:

create in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

exists

public boolean exists()

Specified by:

exists in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

getContentLength

public long getContentLength()

Specified by:

getContentLength in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

getLastModified

public long getLastModified()

Specified by:

getLastModified in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

getName

public String getName()

Specified by:

getName in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

getSource

public String getSource()

Specified by:

getSource in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

list

public List<fr.ens.biologie.genomique.kenetre.storage.DataPath> list()
                                                              throws IOException

Specified by:

list in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

open

public InputStream open()
                 throws IOException

Specified by:

open in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

rawCreate

public OutputStream rawCreate()
                       throws IOException

Specified by:

rawCreate in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

rawOpen

public InputStream rawOpen()
                    throws IOException

Specified by:

rawOpen in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

toFile

public File toFile()

Specified by:

toFile in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

copy

public void copy(fr.ens.biologie.genomique.kenetre.storage.DataPath output)
          throws IOException

Specified by:

copy in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

symlinkOrCopy

public void symlinkOrCopy(fr.ens.biologie.genomique.kenetre.storage.DataPath link)
                   throws IOException

Specified by:

symlinkOrCopy in interface fr.ens.biologie.genomique.kenetre.storage.DataPath

Throws:

IOException

compareTo

public int compareTo(DataFileDataPath o)

Specified by:

compareTo in interface Comparable<DataFileDataPath>

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object