Package fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters

Class AbstractExecutorInterpreter

java.lang.Object

fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters.AbstractExecutorInterpreter

All Implemented Interfaces:

ExecutorInterpreter

Direct Known Subclasses:

DefaultExecutorInterpreter, DockerExecutorInterpreter, GenericExecutorInterpreter

public abstract class AbstractExecutorInterpreter
extends Object
implements ExecutorInterpreter

This class define an abstract executor interpreter that contains the default implementation of the execute() method that use a ProcessBuilder.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
AbstractExecutorInterpreter()

Method Summary

Modifier and Type	Method	Description
ToolExecutorResult	execute(List<String> commandLine, File executionDirectory, File temporaryDirectory, File stdoutFile, File stderrFile, File... filesUsed)	Execute a command line.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters.ExecutorInterpreter

createCommandLine, getName

Constructor Details

AbstractExecutorInterpreter

public AbstractExecutorInterpreter()

Method Details

execute

public ToolExecutorResult execute(List<String> commandLine,
 File executionDirectory,
 File temporaryDirectory,
 File stdoutFile,
 File stderrFile,
 File... filesUsed)
                           throws IOException

Description copied from interface: ExecutorInterpreter

Execute a command line.

Specified by:

execute in interface ExecutorInterpreter

Parameters:

commandLine - the command line to execute

executionDirectory - execution directory

temporaryDirectory - temporary directory

stdoutFile - stdout file

stderrFile - stderr file

filesUsed - files used

Returns:

a ToolExecutor object

Throws:

IOException - if an error occurs while executing the command