Package fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters

Class DockerExecutorInterpreter

java.lang.Object

fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters.AbstractExecutorInterpreter

fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters.DockerExecutorInterpreter

All Implemented Interfaces:

ExecutorInterpreter

public class DockerExecutorInterpreter
extends AbstractExecutorInterpreter

This class define a Docker executor interpreter.

Since:

2.0

Author:

Laurent Jourdren

Field Summary

Fields

Modifier and Type	Field	Description
static String	INTERPRETER_NAME

Constructor Summary

Constructors

Constructor	Description
DockerExecutorInterpreter(String dockerImage)	Constructor.

Method Summary

Modifier and Type	Method	Description
List<String>	createCommandLine(String arguments)	Create the command line for the the argument of the interpreter.
String	getName()	Get the name of the interpreter.
protected fr.ens.biologie.genomique.kenetre.util.process.SimpleProcess	newSimpleProcess()	Create a new SimpleProcess that will be use to launch the command.
String	toString()

Methods inherited from class fr.ens.biologie.genomique.eoulsan.galaxytools.executorinterpreters.AbstractExecutorInterpreter

execute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

INTERPRETER_NAME

public static final String INTERPRETER_NAME

See Also:

Constant Field Values

Constructor Detail

DockerExecutorInterpreter

public DockerExecutorInterpreter(String dockerImage)

Constructor.

Parameters:

dockerImage - Docker image

Method Detail

getName

public String getName()

Description copied from interface: ExecutorInterpreter

Get the name of the interpreter.

Returns:

the name of the interpreter

createCommandLine

public List<String> createCommandLine(String arguments)

Description copied from interface: ExecutorInterpreter

Create the command line for the the argument of the interpreter.

Parameters:

arguments - the interpreter arguments

Returns:

the command line

newSimpleProcess

protected fr.ens.biologie.genomique.kenetre.util.process.SimpleProcess newSimpleProcess()
                                                                                 throws IOException

Description copied from class: AbstractExecutorInterpreter

Create a new SimpleProcess that will be use to launch the command.

Overrides:

newSimpleProcess in class AbstractExecutorInterpreter

Returns:

a new SimpleProcess object

Throws:

IOException - if an error occurs while creating the process

toString

public String toString()

Overrides:

toString in class Object