Package fr.ens.biologie.genomique.eoulsan.modules.diffana

Enum DESeq2.StatisticTest

java.lang.Object

java.lang.Enum<DESeq2.StatisticTest>

fr.ens.biologie.genomique.eoulsan.modules.diffana.DESeq2.StatisticTest

All Implemented Interfaces:

Serializable, Comparable<DESeq2.StatisticTest>

Enclosing class:

DESeq2

public static enum DESeq2.StatisticTest
extends Enum<DESeq2.StatisticTest>

Enum for the statisticTest option in DESeq2 related to the statistic test to be used during the differential expression analysis

Enum Constant Summary

Enum Constants

Enum Constant	Description
LRT
WALD

Method Summary

Modifier and Type	Method	Description
static DESeq2.StatisticTest	get(String name)	Get the statistic test to be used in DESeq2.
String	toDESeq2Value()
static DESeq2.StatisticTest	valueOf(String name)	Returns the enum constant of this type with the specified name.
static DESeq2.StatisticTest[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

WALD

public static final DESeq2.StatisticTest WALD

LRT

public static final DESeq2.StatisticTest LRT

Method Detail

values

public static DESeq2.StatisticTest[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (DESeq2.StatisticTest c : DESeq2.StatisticTest.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static DESeq2.StatisticTest valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

toDESeq2Value

public String toDESeq2Value()

get

public static DESeq2.StatisticTest get(String name)
                                throws EoulsanException

Get the statistic test to be used in DESeq2.

Parameters:

name - name of the enum

Returns:

the statistic test value

Throws:

EoulsanException - if the statistic test value is different from Wald or LRT