Enum ExpressionCounterCounter
- java.lang.Object
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- java.lang.Enum<ExpressionCounterCounter>
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- fr.ens.biologie.genomique.eoulsan.modules.expression.ExpressionCounterCounter
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- All Implemented Interfaces:
Serializable
,Comparable<ExpressionCounterCounter>
public enum ExpressionCounterCounter extends Enum<ExpressionCounterCounter>
This enum define counters for the expression step.- Since:
- 1.0
- Author:
- Laurent Jourdren
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Enum Constant Summary
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description String
counterName()
Get the name of the counter.static ExpressionCounterCounter
getCounterFromEoulsanName(String counterName)
Get an counter from its HTSeq-count namestatic ExpressionCounterCounter
getCounterFromHTSeqCountName(String counterName)
Get an counter from its HTSeq-count nameString
htSeqCountCounterName()
Get the HTSeq-count name of the counter.String
toString()
static ExpressionCounterCounter
valueOf(String name)
Returns the enum constant of this type with the specified name.static ExpressionCounterCounter[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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INVALID_SAM_ENTRIES_COUNTER
public static final ExpressionCounterCounter INVALID_SAM_ENTRIES_COUNTER
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TOTAL_READS_COUNTER
public static final ExpressionCounterCounter TOTAL_READS_COUNTER
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UNUSED_READS_COUNTER
public static final ExpressionCounterCounter UNUSED_READS_COUNTER
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USED_READS_COUNTER
public static final ExpressionCounterCounter USED_READS_COUNTER
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UNMAPPED_READS_COUNTER
public static final ExpressionCounterCounter UNMAPPED_READS_COUNTER
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ELIMINATED_READS_COUNTER
public static final ExpressionCounterCounter ELIMINATED_READS_COUNTER
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TOTAL_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter TOTAL_ALIGNMENTS_COUNTER
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NOT_ALIGNED_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter NOT_ALIGNED_ALIGNMENTS_COUNTER
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NOT_UNIQUE_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter NOT_UNIQUE_ALIGNMENTS_COUNTER
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LOW_QUAL_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter LOW_QUAL_ALIGNMENTS_COUNTER
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EMPTY_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter EMPTY_ALIGNMENTS_COUNTER
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AMBIGUOUS_ALIGNMENTS_COUNTER
public static final ExpressionCounterCounter AMBIGUOUS_ALIGNMENTS_COUNTER
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MISSING_MATES_COUNTER
public static final ExpressionCounterCounter MISSING_MATES_COUNTER
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PARENTS_COUNTER
public static final ExpressionCounterCounter PARENTS_COUNTER
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INVALID_CHROMOSOME_COUNTER
public static final ExpressionCounterCounter INVALID_CHROMOSOME_COUNTER
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PARENT_ID_NOT_FOUND_COUNTER
public static final ExpressionCounterCounter PARENT_ID_NOT_FOUND_COUNTER
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Method Detail
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values
public static ExpressionCounterCounter[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (ExpressionCounterCounter c : ExpressionCounterCounter.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static ExpressionCounterCounter valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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counterName
public String counterName()
Get the name of the counter.- Returns:
- the name of the counter
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htSeqCountCounterName
public String htSeqCountCounterName()
Get the HTSeq-count name of the counter.- Returns:
- the HTSeq-count of the counter
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getCounterFromHTSeqCountName
public static ExpressionCounterCounter getCounterFromHTSeqCountName(String counterName)
Get an counter from its HTSeq-count name- Parameters:
counterName
- the name of the counter to search- Returns:
- the counter if found or null
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getCounterFromEoulsanName
public static ExpressionCounterCounter getCounterFromEoulsanName(String counterName)
Get an counter from its HTSeq-count name- Parameters:
counterName
- the name of the counter to search- Returns:
- the counter if found or null
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toString
public String toString()
- Overrides:
toString
in classEnum<ExpressionCounterCounter>
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