Class ExpressionHadoopModule

  • All Implemented Interfaces:
    Module

    public class ExpressionHadoopModule
    extends AbstractExpressionModule
    This class is the main class for the expression program of the reads in hadoop mode.
    Since:
    1.0
    Author:
    Laurent Jourdren
    • Constructor Detail

      • ExpressionHadoopModule

        public ExpressionHadoopModule()
    • Method Detail

      • execute

        public TaskResult execute​(TaskContext context,
                                  TaskStatus status)
        Description copied from interface: Module
        Execute a task step.
        Parameters:
        context - Execution context
        status - of the task
      • isPairedData

        public static boolean isPairedData​(InputStream samIs)
        Check if a SAM file contains paired-end data.
        Parameters:
        samIs - the SAM file input stream
        Returns:
        true if the SAM file contains paired-end data