Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

Class EmptyFileQC

java.lang.Object

uk.ac.babraham.FastQC.Modules.AbstractQCModule

fr.ens.biologie.genomique.eoulsan.modules.fastqc.EmptyFileQC

All Implemented Interfaces:

uk.ac.babraham.FastQC.Modules.QCModule

public class EmptyFileQC
extends uk.ac.babraham.FastQC.Modules.AbstractQCModule

Empty file FastQC module.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
EmptyFileQC(DataFile file)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	description()
JPanel	getResultsPanel()
boolean	ignoreFilteredSequences()
boolean	ignoreInReport()
void	makeReport(uk.ac.babraham.FastQC.Report.HTMLReportArchive report)
String	name()
void	processSequence(uk.ac.babraham.FastQC.Sequence.Sequence sequence)
boolean	raisesError()
boolean	raisesWarning()
void	reset()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

EmptyFileQC

public EmptyFileQC(DataFile file)

Constructor.

Parameters:

file - The file

Method Details

description

public String description()

ignoreFilteredSequences

public boolean ignoreFilteredSequences()

getResultsPanel

public JPanel getResultsPanel()

reset

public void reset()

name

public String name()

processSequence

public void processSequence(uk.ac.babraham.FastQC.Sequence.Sequence sequence)

raisesError

public boolean raisesError()

raisesWarning

public boolean raisesWarning()

ignoreInReport

public boolean ignoreInReport()

makeReport

public void makeReport(uk.ac.babraham.FastQC.Report.HTMLReportArchive report)
                throws XMLStreamException,
IOException

Throws:

XMLStreamException

IOException