Package fr.ens.biologie.genomique.eoulsan.modules.fastqc
This package contain all the classes related to FastQC.
- Since:
- 2.0
-
Interface Summary Interface Description CounterSequenceFile This interface extends SequenceFile to add a getCount() method that allow to get the count of the read entries. -
Class Summary Class Description EmptyFileQC Empty file FastQC module.FastQCModule This class define a module that compute QC report using FastQC.FastQCRuntimePatcher This class to patch FastQC to be compatible with Hadoop.FastqSequenceFile This class define a SequenceFile for FASTQ files.SAMSequenceFile This class define a SequenceFile for SAM files.