Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

Class FastQCRuntimePatcher

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.fastqc.FastQCRuntimePatcher

public class FastQCRuntimePatcher
extends Object

This class to patch FastQC to be compatible with Hadoop.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
FastQCRuntimePatcher()

Method Summary

Modifier and Type	Method	Description
static String	base64ForIcon(String path, Class clazz)	This method replace the HTMLReportArchive.base64ForIcon() method.
static void	patchFastQC()	Patch FastQC for hadoop mode.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FastQCRuntimePatcher

public FastQCRuntimePatcher()

Method Details

patchFastQC

public static void patchFastQC()
                        throws EoulsanException

Patch FastQC for hadoop mode.

Throws:

EoulsanException - if an error occurs while patching FASTQC

base64ForIcon

public static String base64ForIcon(String path,
 Class clazz)

This method replace the HTMLReportArchive.base64ForIcon() method.

Parameters:

path - path of the resource to load

clazz - the class that call the method

Returns:

an image encoded in base64