Class AbstractSAM2BAMModule

    • Constructor Detail

      • AbstractSAM2BAMModule

        public AbstractSAM2BAMModule()
    • Method Detail

      • getCompressionLevel

        protected int getCompressionLevel()
        Get the compression level to use.
        Returns:
        the compression level to use
      • getReducerTaskCount

        protected int getReducerTaskCount()
        Get the reducer task count.
        Returns:
        the reducer task count
      • getMaxRecordsInRam

        protected int getMaxRecordsInRam()
        Get the maximum records in RAM.
        Returns:
        the reducer task count
      • getName

        public String getName()
        Description copied from interface: Module
        Get the name of the module.
        Returns:
        the name of the module
      • getVersion

        public fr.ens.biologie.genomique.kenetre.util.Version getVersion()
        Description copied from interface: Module
        Get version of the Module.
        Returns:
        a Version object with the version of the Module