Package fr.ens.biologie.genomique.eoulsan.modules.mapping
This package contain all the classes related to the mapping (reads filtering,
mapping and alignments filtering) step.
- Since:
- 1.0
-
Class Summary Class Description AbstractBAM2SAMModule This class define a module for converting BAM files into SAM.AbstractFilterAndMapReadsModule This class define an abstract module for read filtering, mapping and alignments filtering.AbstractReadsFilterModule This class define an abstract module for read filtering.AbstractReadsMapperModule This class define an abstract module for read mapping.AbstractSAM2BAMModule This class define a module for converting SAM files into BAM.AbstractSAM2FASTQModule This class define a module for converting SAM files into BAM.AbstractSAMFilterModule This class define an abstract module for alignments filtering.AbstractSplice2BEDModule This class define a module for converting SAM files into BED. -
Enum Summary Enum Description MappingCounters This enum define the names of the counters of the steps of this package.