Package fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop

Class PreTreatmentMapper

java.lang.Object
org.apache.hadoop.mapreduce.Mapper<org.apache.hadoop.io.LongWritable,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop.PreTreatmentMapper
public class PreTreatmentMapper extends org.apache.hadoop.mapreduce.Mapper<org.apache.hadoop.io.LongWritable,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
This class defines a mapper for the pretreatment of paired-end data before the reads filtering step.
Since:
1.2
Author:
Claire Wallon

  • Nested Class Summary

    Nested classes/interfaces inherited from class org.apache.hadoop.mapreduce.Mapper

    org.apache.hadoop.mapreduce.Mapper.Context

  • Constructor Summary

    Constructors
    Constructor
    Description
    PreTreatmentMapper()
     

  • Method Summary

    Methods inherited from class org.apache.hadoop.mapreduce.Mapper

    run

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • PreTreatmentMapper

      public PreTreatmentMapper()