Teolenn is distributed in several formats for your convenience.
Teolenn is distributed under the General Public License.
A full changelog is available in the release note page.
| Component | Comment |
|---|---|
| Java Runtime Environment (J2SE) | 5.0 or above (However Java 6.0 is fastest). |
| Memory | By default 2048 MiB are allocated to the JVM for running Teolenn.
You can edit this value in the teolenn.sh file with the
-Xmx option of the JVM. However Teolenn use external tools
like soap or genometools that also need memory, 2-3 GiB seem to be
a good amount of memory to run Teolenn. |
| Disk Space | Approximately 6 MiB will be used by Teolenn installation but the disk space needed to compute design is huge. For Trichoderma Reesei genome (33454791 pb) and 60 pb for oligonucleotides length, 26 GiB will be necessary. Fast hard drive with SCSI interface is recommended. |
| Processor architecture | Any architecture processor that can run Java, Soap and genometools. Multi processors or multi cores system (SMP) are strongly recommended. |
| Operating System | Teolenn can only works on *nix system as some externals tools (genometools and soap) can't run under Microsoft Windows. |
| SOAP | If you want to use the redundancy module for oligonucleotide sequence filtering, SOAP is mandatory. SOAP 1.11 is embedded in Teolenn for main platforms (see the Teolenn installing page for more informations). Note that Teolenn is only compatible with SOAP 1.x. SOAP 2.x will not work. |
| genometools | To use the unicity measurement module, genometools is requiered. However genometool 1.2.0 is embedded in Teolenn for main platforms (see the Teolenn installing page for more informations). Upper version of genometools may work with Teolenn. |