The installation of Teolenn on all *nix systems is quite similar and very easy. You don't need to be the root user of your system to install Teolenn.
The only tool you need to have is a tar/gz/bz2/zip extractor.
$ wget http://outils.genomique.biologie.ens.fr/teolenn/teolenn-2.0.1.tar.gz
$ tar xzf teolenn-2.0.1.tar.gz
$ cd teolenn-2.0.1 $ ./teolenn.sh
Soap and genometools can be installed manualy. This is mandatory if the executable is not built-in in Teolenn. The following versions of soap and genometools are embedded in Toelenn:
| Tool | Version | OS | Arch | Comment |
|---|---|---|---|---|
| soap | 1.11 | Linux 2.6.8+ | i386 | |
| soap | 1.11 | Linux 2.6.8+ | x86_64 | |
| soap | 1.11 | Mac OS 10.5+ | i386 | |
| soap | 1.11 | Mac OS 10.5+ | x86_64 | This the i386 that is embedded because it was impossible to compile genometools as a static executable for this architecture. |
| genometools | 1.2.0 | Linux 2.4.1+ | i386 | |
| genometools | 1.2.0 | Linux 2.4.1+ | x86_64 | This the i386 that is embedded because it was impossible to compile genometools as a static executable for this architecture. IA32 compatibility libraries are needed. |
| genometools | 1.2.0 | Mac OS 10.5+ | i386 | |
| genometools | 1.2.0 | Mac OS 10.5+ | x86_64 | This the i386 that is embedded because it was impossible to compile genometools as a static executable for this architecture. |
The source code of the embedded versions of this tools can be downloaded at the following places:
| Tool | Version | URL |
|---|---|---|
| soap | 1.11 | http://soap.genomics.org.cn/soap1/soap_1.11.tar.gz |
| genometools | 1.2.0 | http://genometools.org/pub/genometools-1.2.0.tar.gz |
Note that only 1.x version of soap can work with Teolenn. Soap 2.x is currently not supported by Teolenn.
Once soap and genometools installed, you must create a configuration file to set the path of this tools for Teolenn. See the documentation for more informations.