Uses of Class
fr.ens.biologie.genomique.eoulsan.annotations.HadoopCompatible
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Packages that use HadoopCompatible Package Description fr.ens.biologie.genomique.eoulsan.data.protocols This package contains class for protocols used by theDataFile
classes.fr.ens.biologie.genomique.eoulsan.modules.expression This package contain all the classes related to the expression step.fr.ens.biologie.genomique.eoulsan.modules.fastqc This package contain all the classes related to FastQC.fr.ens.biologie.genomique.eoulsan.modules.mapping.local This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in local mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload This package contain classes related to upload data to HDFS and Cloud. -
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Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.data.protocols
Classes in fr.ens.biologie.genomique.eoulsan.data.protocols with annotations of type HadoopCompatible Modifier and Type Class Description class
AdditionalAnnotationDataProtocol
This class define a additional annotation protocol.class
AnnotationDataProtocol
This class define a annotation protocol.class
FileDataProtocol
This class implements a File Protocol.class
GenomeDataProtocol
This class define a genome protocol.class
GFFDataProtocol
This class define a annotation protocol.class
GTFDataProtocol
This class define a annotation protocol. -
Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.expression
Classes in fr.ens.biologie.genomique.eoulsan.modules.expression with annotations of type HadoopCompatible Modifier and Type Class Description class
ExpressionResultsAnnotationModule
This class define a module that create annotated expression files in TSV, ODS or XLSX format. -
Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.fastqc
Classes in fr.ens.biologie.genomique.eoulsan.modules.fastqc with annotations of type HadoopCompatible Modifier and Type Class Description class
FastQCModule
This class define a module that compute QC report using FastQC. -
Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.mapping.local
Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping.local with annotations of type HadoopCompatible Modifier and Type Class Description class
BAM2SAMLocalModule
This class define a module for converting BAM files into SAM.class
Splice2BEDModule
This class define a module for converting SAM files into BED. -
Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload
Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload with annotations of type HadoopCompatible Modifier and Type Class Description class
DefineDataFormatToDownload
This Step allow to define the list of the formats of the files to download at the end of a Hadoop execution.
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