Uses of Class
fr.ens.biologie.genomique.eoulsan.annotations.HadoopOnly
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Packages that use HadoopOnly Package Description fr.ens.biologie.genomique.eoulsan.data.protocols This package contains class for protocols used by theDataFile
classes.fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop This package contain all the classes related to the expression step in hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop This package contain classes related data management in Hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload This package contain classes related to upload data to HDFS and Cloud. -
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Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.data.protocols
Classes in fr.ens.biologie.genomique.eoulsan.data.protocols with annotations of type HadoopOnly Modifier and Type Class Description class
FTPPathDataProtocol
This class define the FTP protocol in Hadoop mode.class
HDFSPathDataProtocol
This class define the HDFS protocol in Hadoop mode.class
HTTPPathDataProtocol
This class define the HTTP protocol in Hadoop mode.class
HTTPSPathDataProtocol
This class define the HTTP protocol in Hadoop mode. -
Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop
Classes in fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop with annotations of type HadoopOnly Modifier and Type Class Description class
ExpressionHadoopModule
This class is the main class for the expression program of the reads in hadoop mode. -
Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop
Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop with annotations of type HadoopOnly Modifier and Type Class Description class
FilterAndMapReadsHadoopModule
This class define a Step that filter and map read in Hadoop mode.class
ReadsFilterHadoopModule
This class is the main class for the filter reads program in hadoop mode.class
ReadsMapperHadoopModule
This class define an mapper module in Hadoop mode.class
SAM2BAMHadoopModule
This class define a module for converting SAM files into BAM.class
SAMFilterHadoopModule
This class define a filter alignment step in Hadoop mode. -
Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop
Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop with annotations of type HadoopOnly Modifier and Type Class Description class
CopyDesignAndWorkflowFilesToOutputModule
This module copy design and workflow file to output directory. -
Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload
Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload with annotations of type HadoopOnly Modifier and Type Class Description class
HadoopUploadModule
This class define a module for Hadoop file uploading.class
HDFSDataDownloadModule
This class define a download module that retrieve data from HDFS at the end of an analysis.
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