Uses of Package
fr.ens.biologie.genomique.eoulsan.data
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Packages that use fr.ens.biologie.genomique.eoulsan.data Package Description fr.ens.biologie.genomique.eoulsan.checkers This package contains and define checkers of DataFormat.fr.ens.biologie.genomique.eoulsan.core This package contains Eoulsan workflow core class.fr.ens.biologie.genomique.eoulsan.core.workflow This package contains Eoulsan workflow dedicated classes.fr.ens.biologie.genomique.eoulsan.data This package contains classes for data files, data types and data formats.fr.ens.biologie.genomique.eoulsan.data.protocols This package contains class for protocols used by theDataFileclasses.fr.ens.biologie.genomique.eoulsan.data.storages This package contains and define data storages.fr.ens.biologie.genomique.eoulsan.design This package contains classes to handle experimental designs.fr.ens.biologie.genomique.eoulsan.design.io This package contains I/O classes to read and write design files.fr.ens.biologie.genomique.eoulsan.galaxytools.elements This package contain classes related to parameter extractions from XML Galaxy tool xml files.fr.ens.biologie.genomique.eoulsan.modules This package define the steps for the Eoulsan workflow.fr.ens.biologie.genomique.eoulsan.modules.chipseq This packages contains the ChIP-Seq modules.fr.ens.biologie.genomique.eoulsan.modules.diffana This package contain all the classes related to the differential analysis step.fr.ens.biologie.genomique.eoulsan.modules.expression This package contain all the classes related to the expression step.fr.ens.biologie.genomique.eoulsan.modules.fastqc This package contain all the classes related to FastQC.fr.ens.biologie.genomique.eoulsan.modules.generators This package contain generator steps.fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload This package contain classes related to upload data to HDFS and Cloud.fr.ens.biologie.genomique.eoulsan.modules.multiqc fr.ens.biologie.genomique.eoulsan.splitermergers This package contains splitter and merger used when running Eoulsan on a standard cluster to get more parallelization efficiency.fr.ens.biologie.genomique.eoulsan.util This package contain utility classes.fr.ens.biologie.genomique.eoulsan.util.r This package contain utility classes for R usage. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.checkers Class Description Data This interface define data used by ports.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.core Class Description Data This interface define data used by ports.DataFile This class define a DataFile.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.core.workflow Class Description Data This interface define data used by ports.DataFile This class define a DataFile.DataFormat This interface define a DataFormat.DataMetadata This interface define metadata of data objects. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data Class Description Data This interface define data used by ports.DataFile This class define a DataFile.DataFileMetadata This class define source metadataDataFormat This interface define a DataFormat.DataFormatRegistry this class register DataFormat to allow get the DataFormat of a file from its filename.DataMetadata This interface define metadata of data objects. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data.protocols Class Description DataFile This class define a DataFile.DataFileMetadata This class define source metadata -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data.storages Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.design Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.design.io Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.galaxytools.elements Class Description DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules Class Description Data This interface define data used by ports.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.chipseq Class Description DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.diffana Class Description Data This interface define data used by ports.DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.expression Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.fastqc Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.generators Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload Class Description DataFile This class define a DataFile.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.multiqc Class Description Data This interface define data used by ports.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.splitermergers Class Description DataFile This class define a DataFile.DataFormat This interface define a DataFormat. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.util Class Description DataFile This class define a DataFile. -
Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.util.r Class Description DataFile This class define a DataFile.