End run discovering step
This step tests if a run is completed by checking if a file called Basecalling_Netcopy_complete_ReadX.txt exists at the root of the run output directory where X is the maximal read number of the run (e.g. for an indexed paired end run, X is equals to 3).
Configuration parameters
The following table contains the parameters used for this step.
| Aozan property | Type | Default value | Description |
|---|---|---|---|
| hiseq.step | boolean | True | Enables the step, checks all Hiseq or NextSeq run through all run data path directories. |
| hiseq.step.end.email.template | string | Not set | Path of the email template for the end of the end run step. |
Here is an example of email sent at the end of a sequencer run.
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Example on HiSeq 1500
