Uses of Package
fr.ens.biologie.genomique.eoulsan.modules

Packages that use fr.ens.biologie.genomique.eoulsan.modules

Package	Description
fr.ens.biologie.genomique.eoulsan.modules	This package define the steps for the Eoulsan workflow.
fr.ens.biologie.genomique.eoulsan.modules.chipseq	This packages contains the ChIP-Seq modules.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling	This packages contains the peak-calling modules.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc	This packages contains all the quality check modules for ChIP-Seq.
fr.ens.biologie.genomique.eoulsan.modules.diffana	This package contain all the classes related to the differential analysis step.
fr.ens.biologie.genomique.eoulsan.modules.expression	This package contain all the classes related to the expression step.
fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop	This package contain all the classes related to the expression step in hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.expression.local	This package contain all the classes related to the expression step in local mode.
fr.ens.biologie.genomique.eoulsan.modules.fastqc	This package contain all the classes related to FastQC.
fr.ens.biologie.genomique.eoulsan.modules.generators	This package contain generator steps.
fr.ens.biologie.genomique.eoulsan.modules.mapping	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step.
fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mapping.local	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in local mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop	This package contain classes related data management in Hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload	This package contain classes related to upload data to HDFS and Cloud.
fr.ens.biologie.genomique.eoulsan.modules.multiqc
fr.ens.biologie.genomique.eoulsan.modules.singlecell

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules

Class	Description
AbstractModule	This class define an abstract Module.
CheckerModule	This class is a module that launch checkers.
MergerModule	This class define a generic merger module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.chipseq

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.diffana

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.expression

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.expression.local

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.fastqc

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.generators

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.mapping

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.mapping.local

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.multiqc

Class	Description
AbstractModule	This class define an abstract Module.

Classes in fr.ens.biologie.genomique.eoulsan.modules used by fr.ens.biologie.genomique.eoulsan.modules.singlecell

Class	Description
AbstractModule	This class define an abstract Module.