Uses of Package
fr.ens.biologie.genomique.eoulsan
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Packages that use fr.ens.biologie.genomique.eoulsan Package Description fr.ens.biologie.genomique.eoulsan Root package of Eoulsan.fr.ens.biologie.genomique.eoulsan.actions This package contains all the commands (actions) available through the Eoulsan command line.fr.ens.biologie.genomique.eoulsan.checkers This package contains and define checkers of DataFormat.fr.ens.biologie.genomique.eoulsan.core This package contains Eoulsan workflow core class.fr.ens.biologie.genomique.eoulsan.core.schedulers This package contains classes for schedulers.fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters This package contains classes for cluster schedulers.fr.ens.biologie.genomique.eoulsan.core.workflow This package contains Eoulsan workflow dedicated classes.fr.ens.biologie.genomique.eoulsan.data This package contains classes for data files, data types and data formats.fr.ens.biologie.genomique.eoulsan.design This package contains classes to handle experimental designs.fr.ens.biologie.genomique.eoulsan.galaxytools This package contain classes related to read tool xml file from galaxy.fr.ens.biologie.genomique.eoulsan.galaxytools.elements This package contain classes related to parameter extractions from XML Galaxy tool xml files.fr.ens.biologie.genomique.eoulsan.modules This package define the steps for the Eoulsan workflow.fr.ens.biologie.genomique.eoulsan.modules.chipseq This packages contains the ChIP-Seq modules.fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling This packages contains the peak-calling modules.fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc This packages contains all the quality check modules for ChIP-Seq.fr.ens.biologie.genomique.eoulsan.modules.diffana This package contain all the classes related to the differential analysis step.fr.ens.biologie.genomique.eoulsan.modules.expression This package contain all the classes related to the expression step.fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop This package contain all the classes related to the expression step in hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.fastqc This package contain all the classes related to FastQC.fr.ens.biologie.genomique.eoulsan.modules.generators This package contain generator steps.fr.ens.biologie.genomique.eoulsan.modules.mapping This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step.fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop This package contain classes related data management in Hadoop mode.fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload This package contain classes related to upload data to HDFS and Cloud.fr.ens.biologie.genomique.eoulsan.modules.multiqc fr.ens.biologie.genomique.eoulsan.modules.singlecell fr.ens.biologie.genomique.eoulsan.requirements This package contains requirement classes for Eoulsan.fr.ens.biologie.genomique.eoulsan.splitermergers This package contains splitter and merger used when running Eoulsan on a standard cluster to get more parallelization efficiency.fr.ens.biologie.genomique.eoulsan.util This package contain utility classes.fr.ens.biologie.genomique.eoulsan.util.hadoop This package contains utility classes for hadoopS.fr.ens.biologie.genomique.eoulsan.util.locker This package contain an advanced multi JVM lock system. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan Class Description AbstractEoulsanRuntime This class define an abstract EoulsanRuntime.AbstractEoulsanRuntime.EoulsanExecMode This Enum define the Eoulsan execution mode.EoulsanException A nestable Eoulsan exception.EoulsanRuntimeException A nestable Eoulsan exception.HadoopEoulsanRuntime This class define the Runtime to execute low level IO operation for Eoulsan in Hadoop mode.Infos.Info This class define an info.LocalEoulsanRuntime This class define the Runtime to execute low level IO operation for Eoulsan in local mode.Main This class is the main class.Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.actions Class Description Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.checkers Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core Class Description AbstractEoulsanRuntime This class define an abstract EoulsanRuntime.EoulsanException A nestable Eoulsan exception.Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core.schedulers Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters Class Description EoulsanException A nestable Eoulsan exception.Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core.workflow Class Description AbstractEoulsanRuntime This class define an abstract EoulsanRuntime.EoulsanException A nestable Eoulsan exception.Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.data Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.design Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.galaxytools Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.galaxytools.elements Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.chipseq Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.diffana Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.expression Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.fastqc Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.generators Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.mapping Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.multiqc Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules.singlecell Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.requirements Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.splitermergers Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util Class Description EoulsanException A nestable Eoulsan exception.Settings This class define a settings class. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util.hadoop Class Description EoulsanException A nestable Eoulsan exception. -
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util.locker Class Description EoulsanException A nestable Eoulsan exception.